includeLinks/MsqHessian.hpp

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/* ***************************************************************** 
    MESQUITE -- The Mesh Quality Improvement Toolkit

    Copyright 2004 Sandia Corporation and Argonne National
    Laboratory.  Under the terms of Contract DE-AC04-94AL85000 
    with Sandia Corporation, the U.S. Government retains certain 
    rights in this software.

    This library is free software; you can redistribute it and/or
    modify it under the terms of the GNU Lesser General Public
    License as published by the Free Software Foundation; either
    version 2.1 of the License, or (at your option) any later version.

    This library is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
    Lesser General Public License for more details.

    You should have received a copy of the GNU Lesser General Public License 
    (lgpl.txt) along with this library; if not, write to the Free Software
    Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 
    diachin2@llnl.gov, djmelan@sandia.gov, mbrewer@sandia.gov, 
    pknupp@sandia.gov, tleurent@mcs.anl.gov, tmunson@mcs.anl.gov      
   
  ***************************************************************** */
// -*- Mode : c++; tab-width: 3; c-tab-always-indent: t; indent-tabs-mode: nil; c-basic-offset: 3 -*-
//
//    AUTHOR: Todd Munson <tmunson@mcs.anl.gov>
//       ORG: Argonne National Laboratory
//    E-MAIL: tmunson@mcs.anl.gov
//
// ORIG-DATE:  2-Jan-03 at 11:02:19 bu Thomas Leurent
//  LAST-MOD:  5-Oct-04 by Jason Kraftcheck
//
// DESCRIPTION:
// ============
#ifndef MsqHessian_hpp
#define MsqHessian_hpp

#include "Mesquite.hpp"
#include "Matrix3D.hpp"
#include "PatchData.hpp"
#include "MsqTimer.hpp"



#ifdef MSQ_USE_OLD_IO_HEADERS
class ostream;
#else
#include <iosfwd>
#endif

 
namespace Mesquite
{
  class ObjectiveFunction;
  
  class MsqHessian
    {
    protected:  // data accessed directly in tests. 
      PatchData* origin_pd;
      MsqMeshEntity* patchElemArray; 
     
      Matrix3D* mEntries;        
      size_t* mRowStart;        
      size_t* mColIndex;  

      int* mAccumulation;           
      size_t* mAccumElemStart;  

      size_t mSize; 
    
      Matrix3D* mPreconditioner;
      size_t precondArraySize;
    
      Vector3D* mR; 
      Vector3D* mZ; 
      Vector3D* mP; 
      Vector3D* mW; 
      size_t cgArraySizes; 
      size_t maxCGiter; 
    
    public:
      MsqHessian();
      ~MsqHessian();
    
      void initialize(PatchData &pd, MsqError &err);
      inline void zero_out();
      size_t size() {return mSize;}
      void get_diagonal_blocks(msq_std::vector<Matrix3D> &diag, MsqError &err);
      Matrix3D* get_block(size_t i, size_t j);
      inline void accumulate_entries(PatchData &pd, const size_t &elem_index,
                                     Matrix3D* const &mat3d_array, MsqError &err);
      void compute_preconditioner(MsqError &err);
      
      void apply_preconditioner(Vector3D zloc[], Vector3D rloc[], MsqError &err);
      void cg_solver(Vector3D x[], Vector3D b[], MsqError &err);
      friend void axpy(Vector3D res[], size_t size_r,
                       const MsqHessian &H, const Vector3D x[], size_t size_x,
                       const Vector3D y[], size_t size_y, MsqError &err);
      friend class ObjectiveFunction;
      friend msq_stdio::ostream& operator<<( msq_stdio::ostream&, const MsqHessian& );
    };


  inline void MsqHessian::zero_out()
    {
      if (mSize==0) return; // empty hessian.
    
      size_t i;
      for (i=0; i<mRowStart[mSize]; ++i) {
        mEntries[i].zero();
      }
    }

  
  inline void MsqHessian::accumulate_entries(PatchData &pd, const size_t &elem_index,
                                             Matrix3D* const &mat3d_array, MsqError &err)
    {
      if (&pd != origin_pd) {
        MSQ_SETERR(err)( 
                    "Cannot accumulate elements from a different patch. "
                    "Use MsqHessian::initialize first.",
                    MsqError::INVALID_ARG ); 
        return;
      }

      size_t nve = pd.get_element_array(err)[elem_index].vertex_count(); 
      const size_t nb_mat3d = (nve+1)*nve/2;
    
      size_t e = mAccumElemStart[elem_index];
      size_t i;
      int j;
      for (i = 0; i < nb_mat3d; ++i) {
        j = mAccumulation[e++];
        if (j >= 0)
          mEntries[j] += mat3d_array[i];
        else
          mEntries[-j].plus_transpose_equal(mat3d_array[i]);
      }
    }
   
  inline void axpy(Vector3D res[], size_t size_r,
                   const MsqHessian &H, const Vector3D x[], size_t size_x,
                   const Vector3D y[], size_t size_y, MsqError &/*err*/)
    {
      if ((size_r != H.mSize) || (size_x != H.mSize) ||
          (size_y != H.mSize && size_y != 0)) {
        // throw an error
      }

      Vector3D tmpx, tmpm; // for cache opt.
      size_t* col = H.mColIndex;
      const size_t nn = H.mSize;
      size_t rl; // row length
      size_t el; // entries index
      size_t lo;
      size_t c;  // column index
      size_t i, j;
     
      if (y != 0) {
        for (i = 0; i < nn; ++i) {
          res[i] = y[i];
        }
      } 
      else {          // y == 0
        for (i = 0; i < nn; ++i) {
          res[i] = 0.;
        }
      }
      
      el = 0;
      for (i = 0; i < nn; ++i) {
        rl = H.mRowStart[i+1] - H.mRowStart[i];
        lo = *col++;

        // Diagonal entry
        tmpx = x[i];
        eqAx(tmpm, H.mEntries[el], tmpx);
        ++el;
        
        //Non-diagonal entries
        for (j = 1; j < rl; ++j) {
          c = *col++;
          //          res[i] += H.mEntries[e] * x[c];
          plusEqAx(tmpm, H.mEntries[el], x[c]);
          //          res[c] += transpose(H.mEntries[e]) * tmpxi;
          plusEqTransAx(res[c], H.mEntries[el], tmpx);
          ++el;
        }
        res[lo] += tmpm;
      }
    }

  inline void MsqHessian::apply_preconditioner(Vector3D zloc[],
                                               Vector3D rloc[],
                                               MsqError& /*err*/)
    {
      size_t m;

      for (m=0; m<mSize; ++m) {
#ifdef DIAGONAL_PRECONDITIONER
        // preconditioner is identity matrix for now.
        zloc[m][0] = mPreconditioner[m][0][0] * rloc[m][0]; 
        zloc[m][1] = mPreconditioner[m][1][1] * rloc[m][1]; 
        zloc[m][2] = mPreconditioner[m][2][2] * rloc[m][2]; 
#else
        // z = inv(L^T) * r
        zloc[m][0] = rloc[m][0];
        zloc[m][1] = rloc[m][1] - mPreconditioner[m][0][1] * zloc[m][0];
        zloc[m][2] = rloc[m][2] - mPreconditioner[m][0][2] * zloc[m][0] - mPreconditioner[m][1][2] * zloc[m][1];

        // z = inv(D) * z
        zloc[m][0] *= mPreconditioner[m][0][0];
        zloc[m][1] *= mPreconditioner[m][1][1];
        zloc[m][2] *= mPreconditioner[m][2][2];

        // z = inv(L) * z
        zloc[m][2] = zloc[m][2];
        zloc[m][1] = zloc[m][1] - mPreconditioner[m][1][2] * zloc[m][2];
        zloc[m][0] = zloc[m][0] - mPreconditioner[m][0][1] * zloc[m][1] - mPreconditioner[m][0][2] * zloc[m][2];
#endif
      }
    }

  
  inline Matrix3D* MsqHessian::get_block(size_t i, size_t j)
    {
      size_t c;
      
      if (i >= mSize || j >= mSize || j < i)
        return NULL;

      for (c=mRowStart[i]; c<mRowStart[i+1]; ++c) {
        if (mColIndex[c] == j)
          return ( mEntries + c );
      }
    
      // if there is no block at position i,j (zero entry).
      return NULL;
    }


  /* ------------------ I/O ----------------- */

 msq_stdio::ostream& operator<<(msq_stdio::ostream &s, const MsqHessian &h);

} // namespace

#endif // MsqHessian_hpp