abstract class to specify geometry and mesh data More...

Detailed Description

geoMeshBase is an abstract class that specifies an interface for geometry and mesh objects.

Definition at line 102 of file geoMeshBase.H.

Classes
struct	GeoMesh

struct	SideSet

Public Member Functions
	geoMeshBase ()
	Query for conversion from vtk to gmsh. More...

	~geoMeshBase () override

virtual void	write (const std::string &fileName)=0
	Write mesh to file. More...

virtual void	report (std::ostream &out) const =0
	Print a report about the mesh. More...

virtual void	takeGeoMesh (geoMeshBase *otherGeoMesh)
	Take the GeoMesh of another `geoMeshBase`. More...

virtual void	reconstructGeo ()
	Construct the geometry from the mesh alone. More...

virtual void	mergeGeoMesh (geoMeshBase *otherGeoMesh)
	Merge mesh data from a new geoMesh to an existing geoMesh. More...

const std::string &	getGeoEntArrayName () const
	Get the name of the geometric entities array. More...

void	setGeoEntArrayName (const std::string &geoEntArrayName)
	Set the name of the geometric entities array. More...

double	getAngleThreshold () const
	Get the angle threshold used for surface classification. More...

void	setAngleThreshold (double angleThreshold)
	Set the angle threshold used for surface classification. More...

nemId_t	getNumberOfPoints () const
	Get the number of points in mesh. More...

nemId_t	getNumberOfCells () const
	Get the number of cells in mesh. More...

void	getPoint (nemId_t id, std::array< double, 3 > *x) const
	Get the coordinate of a point. More...

std::array< double, 3 >	getPoint (nemId_t id) const
	Get the coordinate of a point. More...

void	getCell (nemId_t cellId, vtkGenericCell *cell) const
	Get cell. More...

vtkCell *	getCell (nemId_t cellId) const
	Get cell. More...

void	getCellBounds (nemId_t cellId, std::array< double, 6 > *bounds) const
	Get cell bounds. More...

std::array< double, 6 >	getCellBounds (nemId_t cellId) const
	Get cell bounds. More...

VTKCellType	getCellType (nemId_t cellId) const
	Get VTK cell type. More...

void	getCellPoints (nemId_t cellId, vtkIdList *ptIds) const
	Get list of point ids defining specified cell. More...

void	getPointCells (nemId_t ptId, vtkIdList *cellIds) const
	Get list of cell ids using specified point. More...

void	getCellNeighbors (nemId_t cellId, vtkIdList ptIds, vtkIdList cellIds) const
	Get list of cells sharing points `ptIds` excluding `cellId`. More...

int	getNumberOfPointDataArrays () const
	Get number of arrays in the point data. More...

void	getPointDataArrayCopy (const std::string &arrayName, vtkAbstractArray array, int arrayIdx=nullptr) const
	Get copy of point data array by name. More...

vtkSmartPointer< vtkAbstractArray >	getPointDataArrayCopy (const std::string &arrayName, int *arrayIdx=nullptr) const
	Create and return a copy of point data array by name. More...

void	getPointDataArrayCopy (int arrayIdx, vtkAbstractArray *array) const
	Get copy of point data array by index. More...

vtkSmartPointer< vtkAbstractArray >	getPointDataArrayCopy (int arrayIdx) const
	Create and return a copy of point data array by index. More...

int	getNumberOfCellDataArrays () const
	Get number of arrays in the cell data. More...

void	getCellDataArrayCopy (const std::string &arrayName, vtkAbstractArray array, int arrayIdx=nullptr) const
	Get copy of cell data array by name. More...

vtkSmartPointer< vtkAbstractArray >	getCellDataArrayCopy (const std::string &arrayName, int *arrayIdx=nullptr) const
	Create and return a copy of cell data array by name. More...

void	getCellDataArrayCopy (int arrayIdx, vtkAbstractArray *array) const
	Get copy of cell data array by index. More...

vtkSmartPointer< vtkAbstractArray >	getCellDataArrayCopy (int arrayIdx) const
	Create and return a copy of cell data array by index. More...

int	getNumberOfFieldDataArrays () const
	Get number of arrays in the field data. More...

void	getFieldDataArrayCopy (const std::string &arrayName, vtkAbstractArray array, int arrayIdx=nullptr) const
	Get copy of field data array by name. More...

vtkSmartPointer< vtkAbstractArray >	getFieldDataArrayCopy (const std::string &arrayName, int *arrayIdx=nullptr) const
	Create and return a copy of field data array by name. More...

void	getFieldDataArrayCopy (int arrayIdx, vtkAbstractArray *array) const
	Get copy of field data array by index. More...

vtkSmartPointer< vtkAbstractArray >	getFieldDataArrayCopy (int arrayIdx) const
	Create and return a copy of field data array by index. More...

Protected Member Functions
	geoMeshBase (GeoMesh inGeoMesh)
	Construct geoMeshBase from a GeoMesh struct. More...

int	setPointDataArray (vtkAbstractArray *array)
	Set point data. More...

int	setCellDataArray (vtkAbstractArray *array)
	Set cell data. More...

int	setFieldDataArray (vtkAbstractArray *array)
	Set field data. More...

void	unsetPointDataArray (int arrayIdx)
	Remove point data array by index. More...

void	unsetPointDataArray (const std::string &arrayName)
	Remove point data array by name. More...

void	unsetCellDataArray (int arrayIdx)
	Remove cell data array by index. More...

void	unsetCellDataArray (const std::string &arrayName)
	Remove cell data array by name. More...

void	unsetFieldDataArray (int arrayIdx)
	Remove field data array by index. More...

void	unsetFieldDataArray (const std::string &arrayName)
	Remove field data array by name. More...

const GeoMesh &	getGeoMesh () const
	Get the underlying geometry object. More...

void	setGeoMesh (const geoMeshBase::GeoMesh &geoMesh)
	Set the underlying geometry object. More...

Static Protected Attributes
static constexpr auto	GEO_ENT_DEFAULT_NAME = "GeoEnt"

Private Member Functions
virtual void	resetNative ()=0

Private Attributes
GeoMesh	_geoMesh

double	_angleThreshold
	Dihedral angle threshold (in radians) to classify surfaces (Default: 30 degrees) More...

Friends
std::ostream &	operator<< (std::ostream &os, const geoMeshBase &base)

Inherits vtkDataObject.

Inherited by NEM::MSH::exoGeoMesh, NEM::MSH::foamGeoMesh, NEM::MSH::gmshGeoMesh, NEM::MSH::inpGeoMesh, NEM::MSH::oshGeoMesh, NEM::MSH::smeshGeoMesh, and NEM::MSH::vtkGeoMesh.

Constructor & Destructor Documentation

◆ geoMeshBase() [1/2]

NEM::MSH::geoMeshBase::geoMeshBase ( )

Parameters

vtkType

Returns: type given by GMSH_MSH_TYPES enum

Definition at line 77 of file geoMeshBase.C.

References NEM::MSH::New().

78 : geoMeshBase({vtkSmartPointer<vtkUnstructuredGrid>::New(), "", "", {}}) {}

NEM::MSH::New

geoMeshBase * New(MeshType meshType)

Create a new mesh object.

Definition: geoMeshFactory.C:116

NEM::MSH::geoMeshBase::geoMeshBase

geoMeshBase()

Query for conversion from vtk to gmsh.

Definition: geoMeshBase.C:77

◆ ~geoMeshBase()

NEM::MSH::geoMeshBase::~geoMeshBase ( )

override

Definition at line 89 of file geoMeshBase.C.

References NEM::MSH::GmshInterface::Finalize().

                           {
   this->ReferenceCount--;
 #ifdef HAVE_GMSH
   GmshInterface::Finalize();
 #endif
   std::cout << "geoMeshBase destructed" << std::endl;
 }

◆ geoMeshBase() [2/2]

NEM::MSH::geoMeshBase::geoMeshBase ( GeoMesh inGeoMesh )

explicitprotected

Parameters

inGeoMesh a mesh, geo, link, and sideSet

Definition at line 80 of file geoMeshBase.C.

References NEM::MSH::GmshInterface::Initialize().

     : _geoMesh(std::move(inGeoMesh)), _angleThreshold(30.0 * M_PI / 180.0) {
   InitializeObjectBase();
 #ifdef HAVE_GMSH
   GmshInterface::Initialize();
 #endif
   std::cout << "geoMeshBase constructed" << std::endl;
 }

Member Function Documentation

◆ getAngleThreshold()

double NEM::MSH::geoMeshBase::getAngleThreshold ( ) const

inline

Returns: angle threshold (in radians)

Definition at line 171 of file geoMeshBase.H.

171 { return _angleThreshold; }

NEM::MSH::geoMeshBase::_angleThreshold

double _angleThreshold

Dihedral angle threshold (in radians) to classify surfaces (Default: 30 degrees)

Definition: geoMeshBase.H:554

◆ getCell() [1/2]

void NEM::MSH::geoMeshBase::getCell	(	nemId_t	cellId,
		vtkGenericCell *	cell
	)		const

inline

Parameters

cellId	cell id
cell	cell

Definition at line 214 of file geoMeshBase.H.

Referenced by NEM::MSH::diffMesh().

                                                            {
     _geoMesh.mesh->GetCell(cellId, cell);
   }

◆ getCell() [2/2]

vtkCell* NEM::MSH::geoMeshBase::getCell ( nemId_t cellId ) const

inline

Parameters

cellId cell id

Returns: cell

Definition at line 222 of file geoMeshBase.H.

                                          {
     return _geoMesh.mesh->GetCell(cellId);
   }

◆ getCellBounds() [1/2]

void NEM::MSH::geoMeshBase::getCellBounds	(	nemId_t	cellId,
		std::array< double, 6 > *	bounds
	)		const

inline

Parameters

cellId	cell id
bounds	array of bounds as (x_min,x_max, y_min,y_max, z_min,z_max)

Definition at line 230 of file geoMeshBase.H.

                                                                         {
     _geoMesh.mesh->GetCellBounds(cellId, bounds->data());
   }

◆ getCellBounds() [2/2]

std::array<double, 6> NEM::MSH::geoMeshBase::getCellBounds ( nemId_t cellId ) const

inline

Parameters

cellId cell id

Returns: array of bounds as (x_min,x_max, y_min,y_max, z_min,z_max)

Definition at line 238 of file geoMeshBase.H.

                                                           {
     std::array<double, 6> bounds{};
     getCellBounds(cellId, &bounds);
     return bounds;
   }

◆ getCellDataArrayCopy() [1/4]

void NEM::MSH::geoMeshBase::getCellDataArrayCopy	(	const std::string &	arrayName,
		vtkAbstractArray *	array,
		int *	arrayIdx = `nullptr`
	)		const

Optionally, get array index.

Parameters

arrayName	array name
array	cell data array
arrayIdx	array index

Definition at line 180 of file geoMeshBase.C.

References _geoMesh, and NEM::MSH::geoMeshBase::GeoMesh::mesh.

Referenced by NEM::MSH::diffMesh().

                                                             {
   getArrCopy(_geoMesh.mesh->GetCellData(), arrayName, arrayIdx, array);
 }

◆ getCellDataArrayCopy() [2/4]

vtkSmartPointer< vtkAbstractArray > NEM::MSH::geoMeshBase::getCellDataArrayCopy	(	const std::string &	arrayName,
		int *	arrayIdx = `nullptr`
	)		const

Optionally, get array index.

Parameters

arrayName	array name
arrayIdx	array index

Returns: pointer to copy of array

Definition at line 186 of file geoMeshBase.C.

References _geoMesh, and NEM::MSH::geoMeshBase::GeoMesh::mesh.

                                                      {
   return getArrCopy(_geoMesh.mesh->GetCellData(), arrayName, arrayIdx);
 }

◆ getCellDataArrayCopy() [3/4]

void NEM::MSH::geoMeshBase::getCellDataArrayCopy	(	int	arrayIdx,
		vtkAbstractArray *	array
	)		const

Parameters

arrayIdx	array index
array	cell data array

Definition at line 191 of file geoMeshBase.C.

References _geoMesh, and NEM::MSH::geoMeshBase::GeoMesh::mesh.

                                                                       {
   getArrCopy(_geoMesh.mesh->GetCellData(), arrayIdx, array);
 }

◆ getCellDataArrayCopy() [4/4]

vtkSmartPointer< vtkAbstractArray > NEM::MSH::geoMeshBase::getCellDataArrayCopy ( int arrayIdx ) const

Parameters

arrayIdx array index

Returns: pointer to copy of array

Definition at line 196 of file geoMeshBase.C.

References _geoMesh, and NEM::MSH::geoMeshBase::GeoMesh::mesh.

                         {
   return getArrCopy(_geoMesh.mesh->GetCellData(), arrayIdx);
 }

◆ getCellNeighbors()

void NEM::MSH::geoMeshBase::getCellNeighbors	(	nemId_t	cellId,
		vtkIdList *	ptIds,
		vtkIdList *	cellIds
	)		const

inline

Parameters

cellId	id of cell to exclude
ptIds	point id
cellIds	list of cell ids

Definition at line 273 of file geoMeshBase.H.

                                                   {
     _geoMesh.mesh->GetCellNeighbors(cellId, ptIds, cellIds);
   }

◆ getCellPoints()

void NEM::MSH::geoMeshBase::getCellPoints	(	nemId_t	cellId,
		vtkIdList *	ptIds
	)		const

inline

Parameters

cellId	cell id
ptIds	list of point ids

Definition at line 256 of file geoMeshBase.H.

                                                              {
     _geoMesh.mesh->GetCellPoints(cellId, ptIds);
   }

◆ getCellType()

VTKCellType NEM::MSH::geoMeshBase::getCellType ( nemId_t cellId ) const

inline

Parameters

cellId cell id

Returns: VTK cell type (see vtk documentation for specifics)

Definition at line 248 of file geoMeshBase.H.

                                                 {
     return static_cast<VTKCellType>(_geoMesh.mesh->GetCellType(cellId));
   }

◆ getFieldDataArrayCopy() [1/4]

void NEM::MSH::geoMeshBase::getFieldDataArrayCopy	(	const std::string &	arrayName,
		vtkAbstractArray *	array,
		int *	arrayIdx = `nullptr`
	)		const

Optionally, get array index.

Parameters

arrayName	array name
array	field data array
arrayIdx	array index

Definition at line 201 of file geoMeshBase.C.

References _geoMesh, and NEM::MSH::geoMeshBase::GeoMesh::mesh.

                                                              {
   getArrCopy(_geoMesh.mesh->GetFieldData(), arrayName, arrayIdx, array);
 }

◆ getFieldDataArrayCopy() [2/4]

vtkSmartPointer< vtkAbstractArray > NEM::MSH::geoMeshBase::getFieldDataArrayCopy	(	const std::string &	arrayName,
		int *	arrayIdx = `nullptr`
	)		const

Optionally, get array index.

Parameters

arrayName	array name
arrayIdx	array index

Returns: pointer to copy of array

Definition at line 207 of file geoMeshBase.C.

References _geoMesh, and NEM::MSH::geoMeshBase::GeoMesh::mesh.

                                                      {
   return getArrCopy(_geoMesh.mesh->GetFieldData(), arrayName, arrayIdx);
 }

◆ getFieldDataArrayCopy() [3/4]

void NEM::MSH::geoMeshBase::getFieldDataArrayCopy	(	int	arrayIdx,
		vtkAbstractArray *	array
	)		const

Parameters

arrayIdx	array index
array	field data array

Definition at line 212 of file geoMeshBase.C.

References _geoMesh, and NEM::MSH::geoMeshBase::GeoMesh::mesh.

                                                                        {
   getArrCopy(_geoMesh.mesh->GetFieldData(), arrayIdx, array);
 }

◆ getFieldDataArrayCopy() [4/4]

vtkSmartPointer< vtkAbstractArray > NEM::MSH::geoMeshBase::getFieldDataArrayCopy ( int arrayIdx ) const

Parameters

arrayIdx array index

Returns: pointer to copy of array

Definition at line 217 of file geoMeshBase.C.

References _geoMesh, and NEM::MSH::geoMeshBase::GeoMesh::mesh.

                         {
   return getArrCopy(_geoMesh.mesh->GetFieldData(), arrayIdx);
 }

◆ getGeoEntArrayName()

const std::string& NEM::MSH::geoMeshBase::getGeoEntArrayName ( ) const

inline

Returns: name of geometric entities array

Definition at line 157 of file geoMeshBase.H.

Referenced by NEM::MSH::diffMesh().

157 { return _geoMesh.link; }

NEM::MSH::geoMeshBase::GeoMesh::link

std::string link

Definition: geoMeshBase.H:424

NEM::MSH::geoMeshBase::_geoMesh

GeoMesh _geoMesh

Definition: geoMeshBase.H:550

◆ getGeoMesh()

const GeoMesh& NEM::MSH::geoMeshBase::getGeoMesh ( ) const

inlineprotected

Note: This is not a copy; Gmsh does not support cloning a model.

Definition at line 533 of file geoMeshBase.H.

533 { return _geoMesh; }

NEM::MSH::geoMeshBase::_geoMesh

GeoMesh _geoMesh

Definition: geoMeshBase.H:550

◆ getNumberOfCellDataArrays()

int NEM::MSH::geoMeshBase::getNumberOfCellDataArrays ( ) const

inline

Returns: number of arrays in the cell data

Definition at line 318 of file geoMeshBase.H.

Referenced by NEM::MSH::diffMesh().

                                         {
     return _geoMesh.mesh->GetCellData()->GetNumberOfArrays();
   }

◆ getNumberOfCells()

nemId_t NEM::MSH::geoMeshBase::getNumberOfCells ( ) const

inline

Returns: number of cells in mesh

Definition at line 190 of file geoMeshBase.H.

Referenced by NEM::MSH::diffMesh().

190 { return _geoMesh.mesh->GetNumberOfCells(); }

NEM::MSH::geoMeshBase::GeoMesh::mesh

vtkSmartPointer< vtkUnstructuredGrid > mesh

Definition: geoMeshBase.H:419

NEM::MSH::geoMeshBase::_geoMesh

GeoMesh _geoMesh

Definition: geoMeshBase.H:550

◆ getNumberOfFieldDataArrays()

int NEM::MSH::geoMeshBase::getNumberOfFieldDataArrays ( ) const

inline

Returns: number of arrays in the field data

Definition at line 355 of file geoMeshBase.H.

                                          {
     return _geoMesh.mesh->GetFieldData()->GetNumberOfArrays();
   }

◆ getNumberOfPointDataArrays()

int NEM::MSH::geoMeshBase::getNumberOfPointDataArrays ( ) const

inline

Returns: number of arrays in the point data

Definition at line 281 of file geoMeshBase.H.

Referenced by NEM::MSH::diffMesh().

                                          {
     return _geoMesh.mesh->GetPointData()->GetNumberOfArrays();
   }

◆ getNumberOfPoints()

nemId_t NEM::MSH::geoMeshBase::getNumberOfPoints ( ) const

inline

Returns: number of points in mesh

Definition at line 183 of file geoMeshBase.H.

Referenced by NEM::MSH::diffMesh().

                                     {
     return _geoMesh.mesh->GetNumberOfPoints();
   }

◆ getPoint() [1/2]

void NEM::MSH::geoMeshBase::getPoint	(	nemId_t	id,
		std::array< double, 3 > *	x
	)		const

inline

Parameters

id	point id
x	array of coordinates as (x,y,z)

Definition at line 196 of file geoMeshBase.H.

Referenced by NEM::MSH::diffMesh().

                                                           {
     _geoMesh.mesh->GetPoint(id, x->data());
   }

◆ getPoint() [2/2]

std::array<double, 3> NEM::MSH::geoMeshBase::getPoint ( nemId_t id ) const

inline

Parameters

id point id

Returns: array of coordinates as (x,y,z)

Definition at line 204 of file geoMeshBase.H.

                                                  {
     std::array<double, 3> x{};
     getPoint(id, &x);
     return x;
   }

◆ getPointCells()

void NEM::MSH::geoMeshBase::getPointCells	(	nemId_t	ptId,
		vtkIdList *	cellIds
	)		const

inline

Parameters

ptId	point id
cellIds	list of cell ids

Definition at line 264 of file geoMeshBase.H.

                                                              {
     _geoMesh.mesh->GetPointCells(ptId, cellIds);
   }

◆ getPointDataArrayCopy() [1/4]

void NEM::MSH::geoMeshBase::getPointDataArrayCopy	(	const std::string &	arrayName,
		vtkAbstractArray *	array,
		int *	arrayIdx = `nullptr`
	)		const

Optionally, get array index.

Parameters

arrayName	array name
array	point data array
arrayIdx	array index

Definition at line 159 of file geoMeshBase.C.

References _geoMesh, and NEM::MSH::geoMeshBase::GeoMesh::mesh.

Referenced by NEM::MSH::diffMesh().

                                                              {
   getArrCopy(_geoMesh.mesh->GetPointData(), arrayName, arrayIdx, array);
 }

◆ getPointDataArrayCopy() [2/4]

vtkSmartPointer< vtkAbstractArray > NEM::MSH::geoMeshBase::getPointDataArrayCopy	(	const std::string &	arrayName,
		int *	arrayIdx = `nullptr`
	)		const

Optionally, get array index.

Parameters

arrayName	array name
arrayIdx	array index

Returns: pointer to copy of array

Definition at line 165 of file geoMeshBase.C.

References _geoMesh, and NEM::MSH::geoMeshBase::GeoMesh::mesh.

                                                      {
   return getArrCopy(_geoMesh.mesh->GetPointData(), arrayName, arrayIdx);
 }

◆ getPointDataArrayCopy() [3/4]

void NEM::MSH::geoMeshBase::getPointDataArrayCopy	(	int	arrayIdx,
		vtkAbstractArray *	array
	)		const

Parameters

arrayIdx	array index
array	point data array

Definition at line 170 of file geoMeshBase.C.

References _geoMesh, and NEM::MSH::geoMeshBase::GeoMesh::mesh.

                                                                        {
   getArrCopy(_geoMesh.mesh->GetPointData(), arrayIdx, array);
 }

◆ getPointDataArrayCopy() [4/4]

vtkSmartPointer< vtkAbstractArray > NEM::MSH::geoMeshBase::getPointDataArrayCopy ( int arrayIdx ) const

Parameters

arrayIdx array index

Returns: pointer to copy of array

Definition at line 175 of file geoMeshBase.C.

References _geoMesh, and NEM::MSH::geoMeshBase::GeoMesh::mesh.

                         {
   return getArrCopy(_geoMesh.mesh->GetPointData(), arrayIdx);
 }

◆ mergeGeoMesh()

void NEM::MSH::geoMeshBase::mergeGeoMesh ( geoMeshBase * otherGeoMesh )

virtual

Deletes the data from the new geoMesh pointer

Parameters

otherGeoMesh A new geoMesh data to merge

Definition at line 113 of file geoMeshBase.C.

References _geoMesh, NEM::MSH::geoMeshBase::GeoMesh::mesh, NEM::MSH::New(), and resetNative().

                                                         {
   vtkSmartPointer<vtkAppendFilter> appendFilter =
       vtkSmartPointer<vtkAppendFilter>::New();
   appendFilter->AddInputData(_geoMesh.mesh);
   appendFilter->AddInputData(otherGeoMesh->_geoMesh.mesh);
   appendFilter->MergePointsOn();
   appendFilter->Update();
   _geoMesh.mesh = appendFilter->GetOutput();
   otherGeoMesh->_geoMesh = {
       vtkSmartPointer<vtkUnstructuredGrid>::New(), {}, {}, {}};
   otherGeoMesh->resetNative();
 }

◆ reconstructGeo()

void NEM::MSH::geoMeshBase::reconstructGeo ( )

virtual

Sets geometry, link, and side set. Does not alter the mesh.

Reimplemented in NEM::MSH::exoGeoMesh, NEM::MSH::oshGeoMesh, and NEM::MSH::inpGeoMesh.

Definition at line 466 of file geoMeshBaseReconstructGeo.C.

References _angleThreshold, _geoMesh, NEM::MSH::geoMeshBase::GeoMesh::geo, GEO_ENT_DEFAULT_NAME, nemAux::getRandomString(), NEM::MSH::geoMeshBase::GeoMesh::link, NEM::MSH::geoMeshBase::GeoMesh::mesh, NEM::MSH::geoMeshBase::SideSet::sides, and NEM::MSH::geoMeshBase::GeoMesh::sideSet.

Referenced by NEM::MSH::inpGeoMesh::reconstructGeo(), NEM::MSH::oshGeoMesh::reconstructGeo(), and NEM::MSH::exoGeoMesh::reconstructGeo().

                                  {
 #ifdef HAVE_GMSH
   if (_geoMesh.geo.empty()) {
     _geoMesh.geo = "geoMesh_" + nemAux::getRandomString(6);
   } else {
     gmsh::model::setCurrent(_geoMesh.geo);
     gmsh::model::remove();
   }
   gmsh::model::add(_geoMesh.geo);
   gmsh::model::setCurrent(_geoMesh.geo);
 #endif
   if (_geoMesh.link.empty()) {
     _geoMesh.link = GEO_ENT_DEFAULT_NAME;
   }
   _geoMesh.sideSet = SideSet{
       computeDiscreteGeoFromMsh(_geoMesh.mesh, _geoMesh.link, _angleThreshold)};
   assert(_geoMesh.mesh->GetPoints() == _geoMesh.sideSet.sides->GetPoints());
 }

◆ report()

void NEM::MSH::geoMeshBase::report ( std::ostream & out ) const

pure virtual

Parameters

out stream

Implemented in NEM::MSH::oshGeoMesh, NEM::MSH::exoGeoMesh, NEM::MSH::foamGeoMesh, NEM::MSH::gmshGeoMesh, and NEM::MSH::vtkGeoMesh.

Definition at line 97 of file geoMeshBase.C.

References getGeoMesh(), mesh, and NEM::MSH::geoMeshBase::GeoMesh::mesh.

Referenced by NEM::MSH::inpGeoMesh::inpGeoMesh(), NEM::MSH::mesh_(), NEM::MSH::gmshGeoMesh::report(), NEM::MSH::vtkGeoMesh::report(), NEM::MSH::foamGeoMesh::report(), NEM::MSH::exoGeoMesh::report(), and NEM::MSH::oshGeoMesh::report().

                                               {
   out << this->GetClassName() << ":\n";
   auto mesh = getGeoMesh().mesh;
   out << "Nodes:\t" << mesh->GetNumberOfPoints() << '\n';
   out << "Elements:\t" << mesh->GetNumberOfCells() << '\n';
 }

◆ resetNative()

virtual void NEM::MSH::geoMeshBase::resetNative ( )

privatepure virtual

Implemented in NEM::MSH::exoGeoMesh, NEM::MSH::oshGeoMesh, NEM::MSH::foamGeoMesh, NEM::MSH::vtkGeoMesh, NEM::MSH::inpGeoMesh, NEM::MSH::gmshGeoMesh, and NEM::MSH::smeshGeoMesh.

Referenced by mergeGeoMesh(), and takeGeoMesh().

◆ setAngleThreshold()

void NEM::MSH::geoMeshBase::setAngleThreshold ( double angleThreshold )

inline

Parameters

angleThreshold (in radians)

Definition at line 176 of file geoMeshBase.H.

                                                 {
     _angleThreshold = angleThreshold;
   }

◆ setCellDataArray()

int NEM::MSH::geoMeshBase::setCellDataArray ( vtkAbstractArray * array )

inlineprotected

Parameters

array array pointer

Returns: array index

Definition at line 473 of file geoMeshBase.H.

                                                 {
     return _geoMesh.mesh->GetCellData()->AddArray(array);
   }

◆ setFieldDataArray()

int NEM::MSH::geoMeshBase::setFieldDataArray ( vtkAbstractArray * array )

inlineprotected

Parameters

array array pointer

Returns: array index

Definition at line 481 of file geoMeshBase.H.

                                                  {
     return _geoMesh.mesh->GetFieldData()->AddArray(array);
   }

◆ setGeoEntArrayName()

void NEM::MSH::geoMeshBase::setGeoEntArrayName ( const std::string & geoEntArrayName )

inline

Parameters

geoEntArrayName name of geometric entities array

Definition at line 162 of file geoMeshBase.H.

                                                             {
     auto a = _geoMesh.mesh->GetCellData()->GetArray(_geoMesh.link.c_str());
     if (a) a->SetName(geoEntArrayName.c_str());
     _geoMesh.link = geoEntArrayName;
   }

◆ setGeoMesh()

void NEM::MSH::geoMeshBase::setGeoMesh ( const geoMeshBase::GeoMesh & geoMesh )

inlineprotected

Parameters

geoMesh a mesh and geometry

Definition at line 538 of file geoMeshBase.H.

References NEM::MSH::geoMeshBase::GeoMesh::mesh, NEM::MSH::geoMeshBase::SideSet::sides, and NEM::MSH::geoMeshBase::GeoMesh::sideSet.

Referenced by NEM::MSH::exoGeoMesh::addCellsToBlock(), NEM::MSH::exoGeoMesh::addElemBlock(), NEM::MSH::exoGeoMesh::addSideSet(), NEM::MSH::exoGeoMesh::reassignCells(), NEM::MSH::exoGeoMesh::reconstructGeo(), NEM::MSH::gmshGeoMesh::resetNative(), NEM::MSH::exoGeoMesh::resetNative(), NEM::MSH::exoGeoMesh::scaleNodes(), NEM::MSH::foamGeoMesh::setFoamMesh(), NEM::MSH::oshGeoMesh::setOshMesh(), NEM::MSH::smeshGeoMesh::setSMeshMesh(), NEM::MSH::vtkGeoMesh::setVtkMesh(), NEM::MSH::exoGeoMesh::stitch(), NEM::MSH::oshGeoMesh::takeGeoMesh(), and NEM::MSH::exoGeoMesh::takeGeoMesh().

                                                      {
     assert(geoMesh.mesh->GetNumberOfCells() == 0 ||
            geoMesh.mesh->GetNumberOfPoints() == 0 ||
            geoMesh.sideSet.sides == nullptr ||
            geoMesh.sideSet.sides->GetPoints() == geoMesh.mesh->GetPoints());
     _geoMesh = geoMesh;
   }

◆ setPointDataArray()

int NEM::MSH::geoMeshBase::setPointDataArray ( vtkAbstractArray * array )

inlineprotected

Parameters

array array pointer

Returns: array index

Definition at line 465 of file geoMeshBase.H.

                                                  {
     return _geoMesh.mesh->GetPointData()->AddArray(array);
   }

◆ takeGeoMesh()

void NEM::MSH::geoMeshBase::takeGeoMesh ( geoMeshBase * otherGeoMesh )

virtual

Note that otherGeoMesh will be left with an empty mesh.

Parameters

otherGeoMesh other geoMeshBase object; mesh will be left empty

Reimplemented in NEM::MSH::exoGeoMesh, and NEM::MSH::oshGeoMesh.

Definition at line 104 of file geoMeshBase.C.

References _geoMesh, NEM::MSH::New(), and resetNative().

Referenced by NEM::MSH::oshGeoMesh::takeGeoMesh(), and NEM::MSH::exoGeoMesh::takeGeoMesh().

                                                        {
   _geoMesh = std::move(otherGeoMesh->_geoMesh);
   otherGeoMesh->_geoMesh = {
       vtkSmartPointer<vtkUnstructuredGrid>::New(), {}, {}, {}};
   otherGeoMesh->resetNative();
   resetNative();
 }

◆ unsetCellDataArray() [1/2]

void NEM::MSH::geoMeshBase::unsetCellDataArray ( int arrayIdx )

inlineprotected

Parameters

arrayIdx array index

Definition at line 503 of file geoMeshBase.H.

                                         {
     _geoMesh.mesh->GetCellData()->RemoveArray(arrayIdx);
   }

◆ unsetCellDataArray() [2/2]

void NEM::MSH::geoMeshBase::unsetCellDataArray ( const std::string & arrayName )

inlineprotected

Parameters

arrayName array name

Definition at line 510 of file geoMeshBase.H.

                                                       {
     _geoMesh.mesh->GetCellData()->RemoveArray(arrayName.c_str());
   }

◆ unsetFieldDataArray() [1/2]

void NEM::MSH::geoMeshBase::unsetFieldDataArray ( int arrayIdx )

inlineprotected

Parameters

arrayIdx array index

Definition at line 517 of file geoMeshBase.H.

                                          {
     _geoMesh.mesh->GetFieldData()->RemoveArray(arrayIdx);
   }

◆ unsetFieldDataArray() [2/2]

void NEM::MSH::geoMeshBase::unsetFieldDataArray ( const std::string & arrayName )

inlineprotected

Parameters

arrayName array name

Definition at line 524 of file geoMeshBase.H.

                                                        {
     _geoMesh.mesh->GetFieldData()->RemoveArray(arrayName.c_str());
   }

◆ unsetPointDataArray() [1/2]

void NEM::MSH::geoMeshBase::unsetPointDataArray ( int arrayIdx )

inlineprotected

Parameters

arrayIdx array index

Definition at line 489 of file geoMeshBase.H.

                                          {
     _geoMesh.mesh->GetPointData()->RemoveArray(arrayIdx);
   }

◆ unsetPointDataArray() [2/2]

void NEM::MSH::geoMeshBase::unsetPointDataArray ( const std::string & arrayName )

inlineprotected

Parameters

arrayName array name

Definition at line 496 of file geoMeshBase.H.

                                                        {
     _geoMesh.mesh->GetPointData()->RemoveArray(arrayName.c_str());
   }

◆ write()

virtual void NEM::MSH::geoMeshBase::write ( const std::string & fileName )

pure virtual

Parameters

fileName file name

Implemented in NEM::MSH::oshGeoMesh, NEM::MSH::exoGeoMesh, NEM::MSH::foamGeoMesh, NEM::MSH::gmshGeoMesh, and NEM::MSH::vtkGeoMesh.

Referenced by NEM::MSH::inpGeoMesh::inpGeoMesh(), and NEM::MSH::mesh_().

Friends And Related Function Documentation

◆ operator<<

std::ostream& operator<<	(	std::ostream &	os,
		const geoMeshBase &	base
	)

friend

Definition at line 129 of file geoMeshBase.H.

                                                                          {
     base.report(os);
     return os;
   }

Member Data Documentation

◆ _angleThreshold

double NEM::MSH::geoMeshBase::_angleThreshold

private

Definition at line 554 of file geoMeshBase.H.

Referenced by reconstructGeo().

◆ _geoMesh

GeoMesh NEM::MSH::geoMeshBase::_geoMesh

private

Definition at line 550 of file geoMeshBase.H.

Referenced by getCellDataArrayCopy(), getFieldDataArrayCopy(), getPointDataArrayCopy(), mergeGeoMesh(), reconstructGeo(), and takeGeoMesh().

◆ GEO_ENT_DEFAULT_NAME

constexpr auto NEM::MSH::geoMeshBase::GEO_ENT_DEFAULT_NAME = "GeoEnt"

staticprotected

Definition at line 446 of file geoMeshBase.H.

Referenced by NEM::MSH::gmshGeoMesh::gmsh2GM(), NEM::MSH::inpGeoMesh::inp2GM(), NEM::MSH::oshGeoMesh::osh2GM(), NEM::MSH::exoGeoMesh::reconstructGeo(), reconstructGeo(), and NEM::MSH::gmshGeoMesh::resetNative().

The documentation for this class was generated from the following files:

Detailed Description

Classes

Public Member Functions

Protected Member Functions

Static Protected Attributes

Private Member Functions

Private Attributes

Friends

Constructor & Destructor Documentation

◆ geoMeshBase() [1/2]

◆ ~geoMeshBase()

◆ geoMeshBase() [2/2]

Member Function Documentation

◆ getAngleThreshold()

◆ getCell() [1/2]

◆ getCell() [2/2]

◆ getCellBounds() [1/2]

◆ getCellBounds() [2/2]

◆ getCellDataArrayCopy() [1/4]

◆ getCellDataArrayCopy() [2/4]

◆ getCellDataArrayCopy() [3/4]

◆ getCellDataArrayCopy() [4/4]

◆ getCellNeighbors()

◆ getCellPoints()

◆ getCellType()

◆ getFieldDataArrayCopy() [1/4]

◆ getFieldDataArrayCopy() [2/4]

◆ getFieldDataArrayCopy() [3/4]

◆ getFieldDataArrayCopy() [4/4]

◆ getGeoEntArrayName()

◆ getGeoMesh()

◆ getNumberOfCellDataArrays()

◆ getNumberOfCells()

◆ getNumberOfFieldDataArrays()

◆ getNumberOfPointDataArrays()

◆ getNumberOfPoints()

◆ getPoint() [1/2]

◆ getPoint() [2/2]

◆ getPointCells()

◆ getPointDataArrayCopy() [1/4]

◆ getPointDataArrayCopy() [2/4]

◆ getPointDataArrayCopy() [3/4]

◆ getPointDataArrayCopy() [4/4]

◆ mergeGeoMesh()

◆ reconstructGeo()

◆ report()

◆ resetNative()

◆ setAngleThreshold()

◆ setCellDataArray()

◆ setFieldDataArray()

◆ setGeoEntArrayName()

◆ setGeoMesh()

◆ setPointDataArray()

◆ takeGeoMesh()

◆ unsetCellDataArray() [1/2]

◆ unsetCellDataArray() [2/2]

◆ unsetFieldDataArray() [1/2]

◆ unsetFieldDataArray() [2/2]

◆ unsetPointDataArray() [1/2]

◆ unsetPointDataArray() [2/2]

◆ write()

Friends And Related Function Documentation

◆ operator<<

Member Data Documentation

◆ _angleThreshold

◆ _geoMesh

◆ GEO_ENT_DEFAULT_NAME